Tuesday, January 29, 2008

list of algorithms for copy number aberration

1. Assessing the Significance of Conserved Genomic Aberrations Using High Resolution Genomic Microarrays. http://genetics.plosjournals.org/perlserv/?request=get-document&doi=10.1371%2Fjournal.pgen.0030143

2. Computation of recurrent minimal genomic alterations from array-CGH data http://bioinformatics.oxfordjournals.org/cgi/content/abstract/22/7/849

3. STAC: A method for testing the significance of DNA copy number aberrations across multiple array-CGH experiments

http://www.genome.org/cgi/content/abstract/gr.5076506v1

4. SIRAC: Supervised Identification of Regions of Aberration in aCGH datasets

http://www.biomedcentral.com/content/pdf/1471-2105-8-422.pdf

5. A Robust Algorithm for Copy Number Detection Using High-Density Oligonucleotide Single Nucleotide Polymorphism Genotyping Arrays

http://cancerres.aacrjournals.org/cgi/content/abstract/65/14/6071

6. Modeling recurrent DNA copy number alterations in array CGH data

http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/13/i450


7.
Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis

http://www.liebertonline.com/doi/abs/10.1089/cmb.2006.13.215?journalCode=cmb


8. Assessing the significance of chromosomalaberrations in cancer: Methodology and application to glioma

http://www.pnas.org/cgi/content/full/104/50/20007




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