February 26 - GUI example 1 / 4 : The Cancer Genome Project
Integrated data management and analysis to put the systemic puzzle together (for more see Mission)
February 19 - Homework review: UCSC data service API
- The reference report was published at http://www.biomedcentral.com/1471-2105/8/333.
- Affymetrix Integrated Genome Browser.
- GenBoree at Baylor uses DAS.
- DAS 2 was released in 2007 and supprots both retrieval and submission.
- DAS workshop 2008.
February 12,14 - S3DB, a distributed semantic DBMS
Individual accounts will be created in class. You can also download your own at http://www.s3db.org/. Additional documentation can also be found here.
The N3 notation for RDF is VERY instructive, have a look here.
For complete documentation on RDF the right place to go is the source, W3C's reference documentation.
example of public RDF browser: Welkin.
example of commercial RDF browser: Sentient.
Function for building S3QL queries: S3QLSyntax
February 7 - more on Graphic User Interfaces